Reproducible Analyses

OpenSAFELY: A platform for analysing electronic health records designed for reproducible research

Electronic health records (EHRs) and other administrative health data are increasingly used in research to generate evidence on the effectiveness, safety, and utilisation of medical products and services, and to inform public health guidance and …

10 Things for Curating Reproducible and FAIR Research

10 Things for Curating Reproducible and FAIR Research (CURE-FAIR) provides standards-based guidelines to follow CURE-FAIR best practices with regards to publishing and archiving computationally reproducible studies, including the associated …

1Economics 270D: Research Transparency Methods in the Social Sciences

This course coversa range of approachesthat aim to enhance the transparency and reproducibility of social science research. It is appropriate for Ph.D. students in social science disciplines and related fields.

A 21 word solution.

One year after publishing "False-Positive Psychology," we propose a simple implementation of disclosure that requires but 21 words to achieve full transparency. This article is written in a casual tone. It includes phone-taken pictures of milk-jars …

A community-endorsed open-source lexicon for contrast agent–based perfusion MRI: A consensus guidelines report from the ISMRM Open Science Initiative for Perfusion Imaging (OSIPI)

This manuscript describes the ISMRM OSIPI (Open Science Initiative for Perfusion Imaging) lexicon for dynamic contrast-enhanced and dynamic susceptibility-contrast MRI. The lexicon was developed by Taskforce 4.2 of OSIPI to provide standardized …

A library of electrophysiological responses in plants - a model of transversal education and open science

Electrophysiology in plants is understudied, and, moreover, an ideal model for student inclusion at all levels of education. Here, we report on an investigation in open science, whereby scientists worked with high school students, faculty, and …

A primer for choosing, designing and evaluating registered reports for qualitative methods

Registered reports are a publication format that involves peer reviewing studies both before and after carrying out research procedures. Although registered reports were originally developed to combat challenges in quantitative and confirmatory study …

A Primer on Systematic Review and Meta-analysis in Diabetes Research

A systematic review is a rigorous process that involves identifying, selecting, and synthesizing available evidence pertaining to an a priori–defined research question. The resulting evidence base may be summarized qualitatively or through a …

A Replication Crisis in Methodological Research?

Statisticians have been keen to critique statistical aspects of the “replication crisis” in other scientific disciplines. But new statistical tools are often published and promoted without any thought to replicability. This needs to change, argue …

A Software Tool for Removing Patient Identifying Information from Clinical Documents

We created a software tool that accurately removes all patient identifying information from various kinds of clinical data documents, including laboratory and narrative reports. We created the Medical De-identification System (MeDS), a software tool …