Reproducible Analyses

 

Diversifying Research Methods Syllabi

This is a collection of research methodology articles, which are first- or senior-authored by women, to promote diverse perspectives in teaching students about research methods and contributing to improving research practices.

Do organisms need an impact factor? Citations of key biological resources including model organisms reveal usage patterns and impact

Research resources like transgenic animals and antibodies are the workhorses of biomedicine, enabling investigators to relatively easily study specific disease conditions. As key biological resources, transgenic animals and antibodies are often …

Draft dated 2016-01-11; please see cuLearn for possible updatesp.1PSYC 5601:Contemporary Research in Personality

This course will provide a survey of current personality research and theorywith an emphasis on recent discussions around methods and scientific reporting. We will consider recent accomplishments, questions, and controversies in personality …

Eleven strategies for making reproducible research and open science training the norm at research institutions

Reproducible research and open science practices have the potential to accelerate scientific progress by allowing others to reuse research outputs, and by promoting rigorous research that is more likely to yield trustworthy results. However, these …

Emerging Scientific Research Practices

This course aims to introduce students to current controversies and new developments in recommended scientific practices. The course is meant to help students think critically about how to conduct better empirical research and how to draw …

Endorsement of open science practices by dental journals: A meta-research study

Objectives This study evaluates the endorsement of open science practices by dental journals. Materials and methods This was a meta-research study that included journals listed in the 2021 Journal Citation Reports under Dentistry. A comprehensive …

ePlatypus: an ecosystem for computational analysis of immunogenomics data

Motivation The maturation of systems immunology methodologies requires novel and transparent computational frameworks capable of integrating diverse data modalities in a reproducible manner. Results Here, we present the ePlatypus computational …

Establishing trust in automated reasoning

Since its beginnings in the 1940s, automated reasoning by computers has become a tool of ever growing importance in scientific research.So far, the rules underlying automated reasoning have mainly beenformulated by humans, in the form of program …

Evaluating Content-Related Validity Evidence Using a Text-Based Machine Learning Procedure

Validity evidence based on test content is critical to meaningful interpretation of test scores. Within high-stakes testing and accountability frameworks, content-related validity evidence is typically gathered via alignment studies, with panels of …

Evaluation of Transparency and Openness Guidelines in Physical Therapy Journals

Objective The goals of this study were to evaluate the extent that physical therapy journals support open science research practices by adhering to the Transparency and Openness Promotion guidelines and to assess the relationship between journal …