Reproducibility

Good enough practices in scientific computing

Computers are now essential in all branches of science, but most researchers are never taught the equivalent of basic lab skills for research computing. As a result, data can get lost, analyses can take much longer than necessary, and researchers are …

Harry Potter and the Methods of Reproducibility

"Harry Potter and the Methods of Reproducibility -- A brief Introduction to Open Science" gives a brief overview of Open Science, particularly reproducibility, for newcomers to the topic. It introduces the concept of questionable research practices …

How to Use OSF as an Electronic Lab Notebook

This webinar outlines how to use the free Open Science Framework (OSF) as an Electronic Lab Notebook for personal work or private collaborations. Fundamental features we cover include how to record daily activity, how to store images or arbitrary …

Image Processing with Python

This lesson shows how to use Python and skimage to do basic image processing. With support from an NSF iUSE grant, Dr. Tessa Durham Brooks and Dr. Mark Meysenburg at Doane College, Nebraska, USA have developed a curriculum for teaching image …

Impact of genetic background and experimental reproducibility on identifying chemical compounds with robust longevity effects

Limiting the debilitating consequences of ageing is a major medical challenge of our time. Robust pharmacological interventions that promote healthy ageing across diverse genetic backgrounds may engage conserved longevity pathways. Here we report …

Intro to Calculating Confidence Intervals

This video will introduce how to calculate confidence intervals around effect sizes using the MBESS package in R. All materials shown in the video, as well as content from our other videos, can be found here: https://osf.io/7gqsi/

Intro to R and RStudio for Genomics

Welcome to R! Working with a programming language (especially if it’s your first time) often feels intimidating, but the rewards outweigh any frustrations. An important secret of coding is that even experienced programmers find it difficult and …

Introduction materials for Reproducible Research Curriculum

Workshop goals - Why are we teaching this - Why is this important - For future and current you - For research as a whole - Lack of reproducibility in research is a real problem Materials and how we'll use them - Workshop landing page, with - links …

Introduction to Cloud Computing for Genomics

Data Carpentry lesson to learn how to work with Amazon AWS cloud computing and how to transfer data between your local computer and cloud resources. The cloud is a fancy name for the huge network of computers that host your favorite websites, stream …

Introduction to Geospatial Concepts

Data Carpentry lesson to understand data structures and common storage and transfer formats for spatial data. The goal of this lesson is to provide an introduction to core geospatial data concepts. It is intended for learners who have no prior …